General
Preferred name
SGC-iMLLT
Synonyms
GQ5 ()
cpd 92 ()
P&D ID
PD120193
CAS
2255338-25-9
Tags
available
probe
Probe info
Probe type
experimental probe
Probe sources
Probe targets
[[ compound.targets[t].gene_name ]]
Probe control
Probe control not defined
Orthogonal probes
3
No orthogonal probes found
Similar probes
1
No structurally similar probes found
Structure formats
[[ format ]]
[[ compound[format === 'MOL' ? 'molblock' : format.toLowerCase()] ]]
Description
(extracted from source data)
COMMENT
SGC-iMLLT was developed based on a low micromolar MLLT1 YEATS domain inhibitor which was identified in a medium throughput screening campaign using AlphaScreen technology. Docking studies utilizing an available crystal structure of MLLT1:H3Kac27 peptide (PDB ID 5J9S) guided the design approach and medicinal chemistry efforts to yield SGC-iMLLT including extensive SAR studies (>200 derivatives). SGC-iMLLT is a selective inhibitor of the YD of MLLT-1 and -3 with no observed off-target activity against related acyllysine reading domains (10 µM compound concentration, AlphaScreen) and 48 recombinant human bromodomain proteins (50 µM compound concentration, thermal shift assay). The binding mode of SGC-iMLLT to MLLT1 YD was deciphered using X-ray crystallography (PDB ID 6HT1) confirming its interaction with the Kac/Kcr binding site of MLLT1 YD. Target engagement was demonstrated by CETSA (MV-4-11 cells, MLLT1) as well as FRAP (U2OS cells transfected with GFP‐tagged MLLT1 and MLLT3), and NanoBRET (HEK293 cells, MLLT3) studies. Moreover, SGC-iMLLT reduces MYC, DDN expression while it increases CD86 expression in MV-4-11 AML. Metabolic stability of SGC-iMLLT was investigated in primary human hepatocytes demonstrating moderate metabolic resistance (t1/2 53 min). The primary metabolic process was determined to be N-demethylation. However, SGC-iMLLT was not used in in vivo studies. SGC-iMLLT is structurally similar to NVS-MLLT-1. Apr 19 2021 - 11:48am
DESCRIPTION
SGC-iMLLT is a first-in-class chemical probe and a potent, selective inhibitor of MLLT1/3-histone interactions with an IC50 of 0.26 ¦ÌM. SGC-iMLLT shows high binding activity towards MLLT1 YEATS domain (YD) and MLLT3 YD (AF9/YEATS3) with Kds of 0.129 and 0.077 ¦ÌM, respectively[1].
PRICE
110
DESCRIPTION
SGC-iMLLT is a potent and selective MLLT1/3-histone interactions inhibitor(IC50 = 0.26 ??M),and is a first-in-class chemical probe displaying cellular target engagement of MLLT1(Kd = 0.129???M) and MLLT3(Kd = 0.077???M).
MOA
Inhibitor
(Chemical Probes.org)
DESCRIPTION
SGC-iMLLT is a potent and selective MLLT1/3-histone interactions inhibitor(IC50 = 0.26 μM),and is a first-in-class chemical probe displaying cellular target engagement of MLLT1(Kd = 0.129 μM) and MLLT3(Kd = 0.077 μM).
(TargetMol Bioactive Compound Library)
[[ p.pathway_name ]]
[[ compound.targets[tid].gene_name ]]
Cell lines
2
Organisms
0
Compound Sets
10
Cayman Chemical Bioactives
Chemical Probes.org
CZ-OPENSCREEN Bioactive Library
EUbOPEN Chemogenomics Library
High-quality chemical probes
IPPI - DB
Mcule NIBR MoA Box Subset
MedChem Express Bioactive Compound Library
Novartis Chemogenetic Library (NIBR MoA Box)
TargetMol Bioactive Compound Library
[[ a.name ]]
[[ ligand_id ]]
free of charge
External IDs
10
Molecular Weight
388.2
Hydrogen Bond Acceptors
5
Hydrogen Bond Donors
2
Rotatable Bonds
4
Ring Count
5
Aromatic Ring Count
4
cLogP
3.69
TPSA
78.84
Fraction CSP3
0.32
Chiral centers
1.0
Largest ring
6.0
QED
0.56
Structural alerts
0
No structural alerts detected
Custom attributes
(extracted from source data)
Target
MLLT1
MLLT3
MLLT1, MLLT3
Epigenetic Reader Domain
Member status
member
Target subclass
YEATS
YEATS, YEATS
Target class
Epigenetics
Epigenetic, Epigenetic
Orthogonal probe
NVS-MLLT-1, PFI-6
Pathway
Chromatin/Epigenetic
Control
SGC‐iMLLT‐N
Recommended Cell Concentration
1 uM
Source data

